Dr Venkata Suresh Bonthala

Bioinformatician
Department:Genetics, Genomics & Breeding
Tel:01732 523734
DD:01732 843833
Fax:01732 849067

Research Interests

I have a PhD in Biosciences (Computational Biology) from The University of Nottingham, UK and I hold a Master of Science degree in Bioinformatics from Barathidasan University, India.

Currently I am working here on a couple of projects as a Bioinformatician.  My core research interest is studying plant pathogens and their relationships with hosts at molecular-level using a variety of computational methods.

Selected Publications

  • Bonthala, V.S#., Mayes, K., Moreton, J., Blythe, M., Wright, V., May, S.T., Twycross, J.. (2016). Identification of gene modules associated with low temperatures response in Bambara groundnut by network-based analysis. PloS One, 11(2),. 1-18 .
  • Gahoi, S., Pandey, N., Bonthala, V.S., Grover, M., Marla, S.S., & Rai, A.. (2016). A computational study on genetic diversity of shatterproof1 (shp1) and shatterproof2 (shp2) genes in some members of Oleracease and its molecular implications. Plant Omics Journal 9 (4),. 248-260.
  • Bhawna, Bonthala, V.S., & Gajula, M.P.. (2016). PvTFDB: a Phaseolus vulgaris transcription factors database for expediting functional genomics in legumes. Database,. 1-6.
  • Bhawna, Chaduvula, P.K., Bonthala, V.S., Manjusha, V., Siddiq, E.A., Polumetla, A.K., & Prasad, G. M. N. V. . (2015). CmMDb: A versatile database for Cucumis melo microsatellite markers and other horticulture crop research. PLoS One, . 10(4), 1-11.
  • Yadav, C.B., Bonthala, V.S., Muthamilarasan, M., Pandey, G., Khan, Y., & Prasad, M. (2015). Genome-wide development of transposable elements-based markers in foxtail millet and construction of an integrated database. DNA Research,. 22(1), 79-90.
  • Parween, S., Nawaz, K., Roy, R., Pole, A.K., Bonthala, V.S., Misra., G, Chattopadhyay, D.. (2015). An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.) Scientific Reports, . 5, 12806.
  • Kumar, K., Muthamilarasan, M., Bonthala, V.S., Roy, R., & Prasad, M.. (2015). Unraveling 14-3-3 proteins in C4 panicoids with emphasis on model plant Setaria italic reveals phosphorylation-dependent subcellular localization of RS splicing factor. PLoS One, 10(4). 1-22.
  • Muthamilarasan, M., Bonthala, V.S., Khandelwal, R., Jaishankar, J., Shweta, S., Nawaz, K., & Prasad, M.. (2015). Global analysis of WRKY transcription factor superfamily in Setaria identifies potential candidates involved in abiotic stress signalling. Frontiers in Plant Science, . 6, 910.
  • Khan, Y*., Yadav, A*., Bonthala, V.S*., Muthamilarasan, M., Yadav, C.B., & Prasad, M.. (2014). Comprehensive genome-wide identification and expression profiling of foxtail millet [Setaria italica (L.)] miRNAs in response to abiotic stress and development of miRNA database. Plant Cell, Tissue and Organ Culture. 118(2), 279-292.
  • Bonthala, V.S., Roy, R., Sahu, K., Misra, G., & Chattopadhyay, D.. (2014). Tomato genomic resources database: An integrated repository of useful tomato genomic information for basic and applied research. PLoS One,. 9(1), 1-9.
  • Muthamilarasan, M., Bonthala, V.S., Pandey, G., Kumari, K., S.K., & Prasad, M.. (2014). Development of 5123 intron-length polymorphic markers for large-scale genotyping applications in foxtail millet. DNA Research, . 21(1), 41-52.
  • Muthamilarasan, M., Khandelwal, R., Yadav, C.B., Bonthala, V. S., Khan, Y., & Prasad, M.. (2014). Identification and Molecular Characterization of MYB Transcription Factor Superfamily in C4 Model Plant Foxtail Millet (Setaria italica L.). PLoS One,. 9(10): e109920.
  • Muthamilarasan, M*., Bonthala, V.S*., Mishra, A.K., Khandelwal, R., Khan, Y., Roy, R., & Prasad, M.. (2014). C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses. Functional Integrative Genomics,. 14(3), 531-543.
  • Lata, C., Mishra, A.K., Muthamilarasan, M., Bonthala, V.S., Khan, Y., & Prasad, M.. (2014). Genome-wide investigation and expression profiling of AP2/ERF transcription factor superfamily in foxtail millet (Setaria italica L.). PLoS One. 9(11): e113092.
  • Bonthala, V.S., Muthamilarasan, M., Roy, R., & Prasad, M.. (2014). FmTFDb: a foxtail millet transcription factors database for expediting functional genomics in millets. Molecular Biology Reports,. 41(10), 6343-6348.
  • Bonthala, V.S., & Chattopadhyay, D.. (2013). Plant Genome Evolution through Gene Gain and Loss. Proc Indian natn Sci Acad,. 79, No. 2 June 2013 pp. 287-290.
  • Puranik, S., Sahu, P.P., Mandal, S.N., Bonthala, V.S., Parida, S.K., & Prasad, M.. (2013). Comprehensive Genome-Wide Survey, Genomic Constitution and Expression Profiling of the NAC Transcription Factor Family in Foxtail Millet (Setaria italica L.). PLoS One,. 8(5): e64594.
  • Parvathi, M.V.S., Murthy, P.B., Vennila, M., & Bonthala, V.S.. (2013). Regulation of BMI1 Polycomb gene expression in histological grades of invasive ductal breast carcinomas and its correlation with hormone receptor status. Tumor Biology,. 34(6), 3807-3815.
  • Bonthala, V.S*., Muthamilarasan, M*., Misra, G., & Prasad, M.. (2013). FmMDb: A Versatile Database of Foxtail Millet Markers for Millets and Bioenergy Grasses Research. PLoS One,. 8(8), 1-7.
  • Samantaray, S.D., Singh, P., Bonthala, V.S., Sharma, S., Taj, G., & Kumar, A.. (2011). MAP Kinase analyser: A tool for plant kinase and substrate analysis. Bioinformatician, 6(7),. 286-7.

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