NIAB EMR maintains open-source software on Github under the eastmallingresearch repository.
Current pipelines and software:
- Crosslink– software for rapid genetic mapping with 10k+ markers- includes awareness of polyploidy
- Image processing for automated disease detection
Li B, Hulin M.T., Brain P, Mansfield J.W., Jackson R.W. and Harrison R.J. . (2015). Rapid, automated detection of stem canker symptoms in woody perennials using artificial neural network analysis Plant Methods 11:. 57.